Package: gp3tools 2.4.0

gp3tools: Import, Inspect, Analyse, and Report Gazepoint GP3 Exports

Tools for importing, inspecting, cleaning, summarising, modelling, and reporting Gazepoint GP3 and Gazepoint Analysis CSV exports. The package supports offline workflows for all-gaze, fixation, pupil, area-of-interest, transition, time-course, quality-audit, and manuscript-reporting analyses. The package methodology is described in the peer-reviewed software paper <doi:10.3390/jemr19040076>.

Authors:Stefanos Balaskas [aut, cre]

gp3tools_2.4.0.tar.gz
gp3tools_2.4.0.zip(r-4.7-any)gp3tools_2.4.0.zip(r-4.6-any)gp3tools_2.4.0.zip(r-4.5-any)
gp3tools_2.4.0.tgz(r-4.6-any)gp3tools_2.4.0.tgz(r-4.5-any)
gp3tools_2.4.0.tar.gz(r-4.7-any)gp3tools_2.4.0.tar.gz(r-4.6-any)
gp3tools_2.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
gp3tools/json (API)

# Install 'gp3tools' in R:
install.packages('gp3tools', repos = c('https://stefanosbalaskas.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stefanosbalaskas/gp3tools/issues

Pkgdown/docs site:https://stefanosbalaskas.github.io

Datasets:

On CRAN:

Conda:

aoi-analysiseye-trackingeyetrackingfacial-analysisfacial-detectionfacial-expressionsfixation-analysisgaze-datagazepointgazepoint-gp3pupil-datapupillometrypythonpython-3python3scanpath

5.99 score 54 scripts 296 downloads 288 exports 39 dependencies

Last updated from:ccc73182f0. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK426
source / vignettesOK357
linux-releaseOK467
macos-releaseOK293
macos-oldrelOK264
windows-develOK243
windows-releaseOK391
windows-oldrelOK397
wasm-releaseOK154

Exports:add_gazepoint_aoiadd_gazepoint_dynamic_aoiadd_gazepoint_polygon_aoianalyse_gazepoint_binocular_sensitivityanalyze_gazepoint_windowas_gazepoint_masteraudit_gazepoint_aoi_coding_matrixaudit_gazepoint_aoi_geometryaudit_gazepoint_aoi_margin_sensitivityaudit_gazepoint_aoi_overlapaudit_gazepoint_aoi_screen_coverageaudit_gazepoint_aoi_uncertaintyaudit_gazepoint_aoi_window_denominatorsaudit_gazepoint_binocular_reconstructionaudit_gazepoint_condition_quality_imbalanceaudit_gazepoint_design_balanceaudit_gazepoint_dynamic_aoi_coverageaudit_gazepoint_event_syncaudit_gazepoint_exclusion_flowaudit_gazepoint_face_qualityaudit_gazepoint_face_syncaudit_gazepoint_fixation_reliabilityaudit_gazepoint_gaze_signal_qualityaudit_gazepoint_masteraudit_gazepoint_naming_consistencyaudit_gazepoint_post_exclusion_balanceaudit_gazepoint_pupil_baselineaudit_gazepoint_pupil_driftaudit_gazepoint_pupil_gapsaudit_gazepoint_pupil_imbalanceaudit_gazepoint_pupil_overlap_riskaudit_gazepoint_pupil_reliabilityaudit_gazepoint_screen_boundsaudit_gazepoint_stimulus_luminanceaudit_gazepoint_timecourse_gridaudit_gp3_pupil_latency_resolutionbaseline_correct_gazepoint_pupilbenchmark_gazepoint_event_detectorsbenchmark_gazepoint_export_performancebootstrap_gazepoint_scanpath_clustersbootstrap_gazepoint_timecoursecheck_gazepoint_bayesian_readinesscheck_gazepoint_file_pairscheck_gazepoint_model_convergencecheck_gazepoint_model_overdispersioncheck_gazepoint_model_singularitycheck_gazepoint_performance_regressioncheck_gazepoint_real_data_readinesscheck_sampling_rateclassify_gazepoint_events_hmmclassify_gazepoint_exportclean_gazepoint_by_tracklosscluster_gazepoint_scanpathscollect_gazepoint_qc_summariescombine_gazepoint_eyescompare_gazepoint_event_detectorscompare_gazepoint_nested_modelscompute_gazepoint_aoi_entropycompute_gazepoint_aoi_sequence_metricscompute_gazepoint_aoi_transition_matrixcompute_gazepoint_saccade_metricscompute_gazepoint_scanpath_geometrycompute_gazepoint_scanpath_similaritycompute_gazepoint_sequence_complexitycompute_gazepoint_sequence_distancecompute_gazepoint_sequence_recurrencecompute_gazepoint_time_varying_transition_matrixcompute_gazepoint_transition_network_metricscompute_transition_matrixconstruct_gazepoint_combined_pupilcreate_gazepoint_analysis_decision_auditcreate_gazepoint_bayesian_sapcreate_gazepoint_brms_templatecreate_gazepoint_cross_package_reportcreate_gazepoint_event_review_templatecreate_gazepoint_face_reporting_checklistcreate_gazepoint_hddm_fit_scriptcreate_gazepoint_markovchain_objectcreate_gazepoint_mastercreate_gazepoint_preprocessing_multiversecreate_gazepoint_preprocessing_registrycreate_gazepoint_quality_reportcreate_gazepoint_reportcreate_gazepoint_reporting_checklistdetect_gazepoint_blinksdetect_gazepoint_fixations_ivtdetect_gazepoint_fixations_velocitydiagnose_gazepoint_binocular_pupildiagnose_gazepoint_cluster_designdiagnose_gazepoint_gammdiagnose_gazepoint_glmmdownsample_gazepoint_pupilestimate_gazepoint_cluster_offsetestimate_gazepoint_cluster_onsetestimate_gazepoint_divergence_pointexport_gazepoint_cluster_resultsexport_gazepoint_heatmap_pngexport_gazepoint_master_auditexport_gazepoint_mne_cluster_inputexport_gazepoint_model_tablesexport_gazepoint_permuco_cluster_inputexport_gazepoint_permutes_cluster_inputexport_gazepoint_tablesexport_gazepoint_to_bidsextract_gazepoint_representative_scanpathsfilter_gazepoint_cnn_uncertaintyfit_gazepoint_aoi_brmsfit_gazepoint_aoi_gammfit_gazepoint_aoi_model_sensitivityfit_gazepoint_aoi_window_glmmfit_gazepoint_binocular_calibrationfit_gazepoint_brms_modelfit_gazepoint_face_window_lmmfit_gazepoint_gcafit_gazepoint_multimodal_response_modelfit_gazepoint_pupil_gammfit_gazepoint_pupil_pfe_gammfit_gazepoint_pupil_window_lmmfit_gazepoint_pupil_window_sensitivityfit_gazepoint_transition_count_nb_sensitivityflag_gazepoint_pupilflag_gazepoint_pupil_artifactsflag_gazepoint_pupil_hampelflag_gazepoint_sequence_anomaliesflag_tracking_qualitygp3tools_naming_policygp3tools_performance_limitsharmonize_gazepoint_screen_coordinatesimpute_gazepoint_pupil_gpinspect_gazepoint_columnsinterpolate_gazepoint_blinksinterpolate_gazepoint_pupilinterpolate_gazepoint_pupil_pchiplaunch_gazepoint_qc_dashboardmean_gazepoint_pupilplot_gazepoint_aoi_gammplot_gazepoint_aoi_sensitivityplot_gazepoint_aoi_timelineplot_gazepoint_aoi_transition_matrixplot_gazepoint_aoi_verificationplot_gazepoint_binocular_diagnosticsplot_gazepoint_cluster_null_distributionplot_gazepoint_cluster_permutationplot_gazepoint_cluster_resultsplot_gazepoint_event_detector_agreementplot_gazepoint_event_detector_benchmarkplot_gazepoint_face_qualityplot_gazepoint_gcaplot_gazepoint_heatmapplot_gazepoint_heatmap_overlayplot_gazepoint_missingness_profileplot_gazepoint_model_predictionsplot_gazepoint_model_residualsplot_gazepoint_multiverse_resultsplot_gazepoint_phase_timelineplot_gazepoint_pupil_preprocessingplot_gazepoint_pupil_statusplot_gazepoint_pupil_timecourseplot_gazepoint_qc_overviewplot_gazepoint_quality_dashboardplot_gazepoint_scanpathplot_gazepoint_scanpath_cluster_stabilityplot_gazepoint_scanpath_clustersplot_gazepoint_scanpathsplot_gazepoint_stimulus_layout_qcplot_gazepoint_time_seriesplot_gazepoint_time_varying_effectplot_sampling_rateplot_tracking_qualityplot_transition_heatmapprepare_gazepoint_aoi_gamm_dataprepare_gazepoint_aoi_glmm_dataprepare_gazepoint_aoi_sequencesprepare_gazepoint_cluster_dataprepare_gazepoint_eyetools_dataprepare_gazepoint_eyetrackingr_dataprepare_gazepoint_fixation_aligned_dataprepare_gazepoint_gazer_dataprepare_gazepoint_gca_dataprepare_gazepoint_gpbiometrics_bridgeprepare_gazepoint_hddm_exportprepare_gazepoint_heatmap_dataprepare_gazepoint_hmm_dataprepare_gazepoint_multimodal_dataprepare_gazepoint_pupil_gamm_dataprepare_gazepoint_pupil_window_model_dataprepare_gazepoint_pupillometryr_dataprepare_gazepoint_semimarkov_dataprepare_gazepoint_survival_dataprepare_gazepoint_timecourse_test_dataprepare_gazepoint_traminer_datapreprocess_gazepoint_signalsread_gazepointread_gazepoint_face_exportread_gazepoint_folderread_gazepoint_summaryrecalibrate_gazepoint_gazerecommend_gazepoint_exclusionsrecommend_gazepoint_model_familyreconstruct_gazepoint_binocular_pupilregress_gazepoint_pupilsreport_gazepoint_cluster_permutationreport_gazepoint_face_qcreport_gazepoint_missingnessreport_gazepoint_multiversereport_gazepoint_phase_coveragereport_gazepoint_qc_overviewreport_gazepoint_qualityrun_gazepoint_aoi_multiverserun_gazepoint_aoi_sensitivityrun_gazepoint_cluster_permutationrun_gazepoint_cluster_permutation_anovarun_gazepoint_cluster_permutation_covariate_adjustedrun_gazepoint_cluster_permutation_lmerrun_gazepoint_cluster_permutation_parallelrun_gazepoint_cluster_threshold_sensitivityrun_gazepoint_eyetools_fixation_detectionrun_gazepoint_gazer_crosscheckrun_gazepoint_gpbiometrics_workflowrun_gazepoint_latency_analysisrun_gazepoint_model_leave_one_outrun_gazepoint_multidimensional_cluster_permutationrun_gazepoint_pupil_multiverserun_gazepoint_tfcerun_gazepoint_workflowsave_gazepoint_plotssegment_gazepoint_task_phasesselect_gazepoint_adaptive_trialselect_gazepoint_scanpath_clusterssimulate_gazepoint_cluster_timecourse_datasimulate_gazepoint_datasimulate_gazepoint_fixationssimulate_gazepoint_pupil_datasmooth_gazepoint_coordinatesmooth_gazepoint_pupilstandardise_gazepoint_namesstandardize_gazepoint_face_columnsstress_test_gazepoint_binocular_reconstructionsummarise_aoi_samplessummarise_fixationssummarise_gazepoint_aoisummarise_gazepoint_aoi_entriessummarise_gazepoint_aoi_transitionssummarise_gazepoint_aoi_trial_featuressummarise_gazepoint_aoi_windowssummarise_gazepoint_binocular_reportingsummarise_gazepoint_clusterssummarise_gazepoint_coordinate_coveragesummarise_gazepoint_emmeanssummarise_gazepoint_event_detector_agreementsummarise_gazepoint_event_detector_benchmarksummarise_gazepoint_face_qualitysummarise_gazepoint_face_reactivitysummarise_gazepoint_face_windowssummarise_gazepoint_fixation_trialssummarise_gazepoint_fixed_effectssummarise_gazepoint_markovchainsummarise_gazepoint_missingnesssummarise_gazepoint_multiverse_resultssummarise_gazepoint_phase_coveragesummarise_gazepoint_pupilsummarise_gazepoint_pupil_response_featuressummarise_gazepoint_pupil_trial_featuressummarise_gazepoint_pupil_windowssummarise_gazepoint_qc_statussummarise_gazepoint_scanpath_cluster_stabilitysummarise_gazepoint_semimarkovsummarise_gazepoint_spatial_qualitysummarise_gazepoint_time_clusterssummarise_gazepoint_workflowsummarise_tracking_qualitysummarize_gazepoint_coordinate_coveragesummarize_gazepoint_face_qualitysummarize_gazepoint_face_reactivitysummarize_gazepoint_face_windowssummarize_gazepoint_missingnesssummarize_gazepoint_phase_coveragesummarize_gazepoint_pupil_response_featuressummarize_gazepoint_qc_statussummarize_gazepoint_time_clusterssync_gazepoint_face_datatidy_gazepoint_model_summarytransform_gazepoint_aoi_empirical_logitvalidate_gazepoint_binocular_reconstructionvalidate_gazepoint_masterwrite_gazepoint_naming_auditwrite_gazepoint_outputswrite_gazepoint_performance_benchmark

Dependencies:bitbit64clicliprcpp11crayondplyrfarvergenericsggplot2gluegtablehmsisobandlabelinglifecyclemagrittrpillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerreadrrlangS7scalesstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithr

DABEST-style estimation graphics for Gazepoint studies
Raw observations, contrast estimation and scientific independence | Rendered paired estimation demonstration (synthetic)
Rendered fromdabest-estimation-designs.Rmdusingknitr::rmarkdown

Last update: 2026-10-09
Started: 2026-10-09

Ecosystem update — September 2026
Related methodological addition
Rendered fromecosystem-update-2026-09.Rmdusingknitr::rmarkdown

Last update: 2026-09-14
Started: 2026-09-14

AOI analysis workflow
Overview | 1. Load example data or import your own exports | 2. Validate the master table | 3. AOI geometry and coding checks | 4. AOI entries and AOI-window summaries | 5. AOI-window GLMM | 6. AOI, fixation, and transition features | 7. Advanced sequence-model preparation | 8. AOI time-course GAMM | 9. Diagnostics and reporting
Rendered fromaoi_workflow.Rmdusingknitr::rmarkdown

Last update: 2026-06-30
Started: 2026-06-16

Pupil preprocessing and analysis workflow
Overview | 1. Load example data or import your own exports | 2. Validate the master table | 3. Light pupil preprocessing branch | 4. Conservative artifact-cleaned branch | 5. Pupil quality audits | 6. Reliability and sensitivity checks | 7. Confirmatory pupil-window LMM | 8. Pupil time-course models | 9. Cluster permutation and divergence point | 10. Reporting
Rendered frompupil_workflow.Rmdusingknitr::rmarkdown

Last update: 2026-06-30
Started: 2026-06-16

Readme and manuals

Help Manual

Help pageTopics
Add rectangular AOI membership to gaze dataadd_gazepoint_aoi
Add time-varying AOI membership to Gazepoint dataadd_gazepoint_dynamic_aoi
Add polygon AOI membership to Gazepoint dataadd_gazepoint_polygon_aoi
Compare pupil-construction policies as a sensitivity analysisanalyse_gazepoint_binocular_sensitivity
Summarise gaze or pupil measures in sliding time windowsanalyze_gazepoint_window
Convert Gazepoint all-gaze data to a master sample tableas_gazepoint_master
Audit AOI coding against geometryaudit_gazepoint_aoi_coding_matrix
Audit AOI geometry definitionsaudit_gazepoint_aoi_geometry
Audit AOI margin sensitivityaudit_gazepoint_aoi_margin_sensitivity
Audit AOI overlapaudit_gazepoint_aoi_overlap
Audit AOI coverage against screen boundsaudit_gazepoint_aoi_screen_coverage
Audit AOI window denominators before binomial modellingaudit_gazepoint_aoi_window_denominators
Audit binocular reconstruction burden and imbalanceaudit_gazepoint_binocular_reconstruction
Audit condition-level quality imbalanceaudit_gazepoint_condition_quality_imbalance
Audit Gazepoint experimental design balanceaudit_gazepoint_design_balance
Audit time-varying AOI coverageaudit_gazepoint_dynamic_aoi_coverage
Audit Gazepoint event and timing synchronisationaudit_gazepoint_event_sync
Audit Gazepoint exclusion and retention flowaudit_gazepoint_exclusion_flow
Audit external facial-behaviour data qualityaudit_gazepoint_face_quality
Audit synchronisation between Gazepoint and external facial-behaviour dataaudit_gazepoint_face_sync
Audit split-half reliability of fixation or AOI metricsaudit_gazepoint_fixation_reliability
Audit Gazepoint gaze-signal qualityaudit_gazepoint_gaze_signal_quality
Audit a Gazepoint master sample tableaudit_gazepoint_master
Audit British and American summary-function spellingsaudit_gazepoint_naming_consistency
Audit post-exclusion condition balanceaudit_gazepoint_post_exclusion_balance
Audit Gazepoint pupil baseline qualityaudit_gazepoint_pupil_baseline
Audit Gazepoint pupil driftaudit_gazepoint_pupil_drift
Audit Gazepoint pupil interpolation gapsaudit_gazepoint_pupil_gaps
Audit Gazepoint pupil preprocessing imbalanceaudit_gazepoint_pupil_imbalance
Audit Gazepoint pupil-response overlap riskaudit_gazepoint_pupil_overlap_risk
Audit split-half reliability for Gazepoint pupil outcomesaudit_gazepoint_pupil_reliability
Audit Gazepoint gaze coordinates against screen boundsaudit_gazepoint_screen_bounds
Audit stimulus luminance and brightness for Gazepoint studiesaudit_gazepoint_stimulus_luminance
Audit a Gazepoint time-course grid for cluster-permutation readinessaudit_gazepoint_timecourse_grid
Audit GP3 pupil-latency estimator sensitivityaudit_gp3_pupil_latency_resolution
Baseline-correct Gazepoint pupil databaseline_correct_gazepoint_pupil
Benchmark Gazepoint event detectors against reviewed eventsbenchmark_gazepoint_event_detectors
Benchmark gp3tools on increasingly large Gazepoint exportsbenchmark_gazepoint_export_performance
Bootstrap scanpath-cluster stabilitybootstrap_gazepoint_scanpath_clusters
Bootstrap time-course summariesbootstrap_gazepoint_timecourse
Check readiness of a Gazepoint-derived dataset for Bayesian or advanced modelscheck_gazepoint_bayesian_readiness
Check Gazepoint all-gaze and fixation file pairscheck_gazepoint_file_pairs
Check model convergencecheck_gazepoint_model_convergence
Check model overdispersioncheck_gazepoint_model_overdispersion
Check model singularitycheck_gazepoint_model_singularity
Check gp3tools performance results against regression limitscheck_gazepoint_performance_regression
Check real-data readiness before Gazepoint analysischeck_gazepoint_real_data_readiness
Check sampling rate by groupcheck_sampling_rate
Classify gaze events with a lightweight unsupervised HMMclassify_gazepoint_events_hmm
Classify a Gazepoint exportclassify_gazepoint_export
Flag or filter Gazepoint data by tracklossclean_gazepoint_by_trackloss
Cluster Gazepoint AOI scanpathscluster_gazepoint_scanpaths
Collect Gazepoint QC summariescollect_gazepoint_qc_summaries
Combine left and right Gazepoint eye channelscombine_gazepoint_eyes
Compare Gazepoint event-detection workflowscompare_gazepoint_event_detectors
Compare nested Gazepoint modelscompare_gazepoint_nested_models
Compute AOI entropy metricscompute_gazepoint_aoi_entropy
Compute AOI sequence metricscompute_gazepoint_aoi_sequence_metrics
Compute Gazepoint AOI transition matricescompute_gazepoint_aoi_transition_matrix
Compute basic saccade metrics from fixation coordinatescompute_gazepoint_saccade_metrics
Compute scanpath geometry features by subject and trialcompute_gazepoint_scanpath_geometry
Compute AOI scanpath similaritycompute_gazepoint_scanpath_similarity
Compute AOI sequence complexity metricscompute_gazepoint_sequence_complexity
Compute AOI sequence distancecompute_gazepoint_sequence_distance
Compute simple categorical sequence recurrence metricscompute_gazepoint_sequence_recurrence
Compute time-varying Gazepoint transition matricescompute_gazepoint_time_varying_transition_matrix
Compute lightweight AOI transition-network metricscompute_gazepoint_transition_network_metrics
Compute an AOI transition matrixcompute_transition_matrix
Construct an explicitly governed combined pupil signalconstruct_gazepoint_combined_pupil
Create a final Gazepoint analysis-decision auditcreate_gazepoint_analysis_decision_audit
Create a Bayesian ocular Statistical Analysis Plan checklistcreate_gazepoint_bayesian_sap
Create brms formula and prior templates for Gazepoint-derived metricscreate_gazepoint_brms_template
Create a combined gp3tools-gpbiometrics workflow reportcreate_gazepoint_cross_package_report
Create a manual event-review templatecreate_gazepoint_event_review_template
Create a reporting checklist for external facial-behaviour workflowscreate_gazepoint_face_reporting_checklist
Create a Python HDDM fitting script from a Gazepoint HDDM exportcreate_gazepoint_hddm_fit_script
Create a Gazepoint AOI Markov-chain objectcreate_gazepoint_markovchain_object
Create a master long-format dataset from Gazepoint all-gaze datacreate_gazepoint_master
Create a Gazepoint preprocessing multiversecreate_gazepoint_preprocessing_multiverse
Create a Gazepoint pupil-preprocessing registrycreate_gazepoint_preprocessing_registry
Create a Gazepoint HTML diagnostic reportcreate_gazepoint_report
Create a Gazepoint reporting checklistcreate_gazepoint_reporting_checklist
Detect blink intervals from pupil measurementsdetect_gazepoint_blinks
Detect simple I-VT fixations from gaze samplesdetect_gazepoint_fixations_ivt
Detect fixations with a velocity-threshold algorithmdetect_gazepoint_fixations_velocity
Diagnose binocular pupil quality and agreementdiagnose_gazepoint_binocular_pupil
Diagnose the design assumptions of a Gazepoint cluster-permutation workflowdiagnose_gazepoint_cluster_design
Diagnose GAM and BAM modelsdiagnose_gazepoint_gamm
Diagnose GLMM, LMM, and GLM modelsdiagnose_gazepoint_glmm
Downsample pupil data by integer-factor aggregationdownsample_gazepoint_pupil
Guardrail for exact cluster-offset estimationestimate_gazepoint_cluster_offset
Guardrail for exact cluster-onset estimationestimate_gazepoint_cluster_onset
Estimate a bootstrapped divergence point between two Gazepoint time coursesestimate_gazepoint_divergence_point
Export Gazepoint cluster-permutation resultsexport_gazepoint_cluster_results
Export a Gazepoint heatmap plot to PNGexport_gazepoint_heatmap_png
Export a Gazepoint master table, audit tables, and validation tablesexport_gazepoint_master_audit
Export Gazepoint time-course data for MNE-style cluster workflowsexport_gazepoint_mne_cluster_input
Export manuscript-ready model tablesexport_gazepoint_model_tables
Export Gazepoint time-course data for permuco-style cluster workflowsexport_gazepoint_permuco_cluster_input
Export Gazepoint time-course data for permutes-style cluster workflowsexport_gazepoint_permutes_cluster_input
Export Gazepoint analysis tables to CSV filesexport_gazepoint_tables
Export Gazepoint data to a lightweight BIDS-style folderexport_gazepoint_to_bids
Extract representative scanpathsextract_gazepoint_representative_scanpaths
Apply uncertainty filtering to Bayesian CNN or webcam gaze outputsfilter_gazepoint_cnn_uncertainty
Fit an optional Bayesian AOI model with brmsfit_gazepoint_aoi_brms
Fit AOI time-course GAMMsfit_gazepoint_aoi_gamm
Fit AOI-window model-family sensitivity checksfit_gazepoint_aoi_model_sensitivity
Fit an AOI-window binomial GLMMfit_gazepoint_aoi_window_glmm
Fit audited cross-eye pupil calibration modelsfit_gazepoint_binocular_calibration
Fit an optional brms model for Gazepoint-derived datafit_gazepoint_brms_model
Fit a facial-behaviour window mixed or linear modelfit_gazepoint_face_window_lmm
Fit a Gazepoint Growth Curve Analysis mixed modelfit_gazepoint_gca
Fit a multimodal response modelfit_gazepoint_multimodal_response_model
Fit a Gazepoint pupil GAMMfit_gazepoint_pupil_gamm
Fit a gaze-position-adjusted pupil GAMM sensitivity modelfit_gazepoint_pupil_pfe_gamm
Fit confirmatory pupil-window linear mixed modelsfit_gazepoint_pupil_window_lmm
Run sensitivity models for confirmatory pupil-window analysesfit_gazepoint_pupil_window_sensitivity
Fit optional negative-binomial transition-count sensitivity modelsfit_gazepoint_transition_count_nb_sensitivity
Flag invalid, missing, implausible, and outlying Gazepoint pupil samplesflag_gazepoint_pupil
Flag Gazepoint pupil artifacts before interpolationflag_gazepoint_pupil_artifacts
Flag pupil artifacts with a Hampel filterflag_gazepoint_pupil_hampel
Flag unusual AOI sequencesflag_gazepoint_sequence_anomalies
Flag low-quality Gazepoint recordingsflag_tracking_quality
Gazepoint adapters for censored gaze-latency survival analysisprepare_gazepoint_survival_data run_gazepoint_latency_analysis
Gazepoint Adapters for AOI Perturbation and Uncertainty Analysisaudit_gazepoint_aoi_uncertainty gazepoint_aoi_uncertainty plot_gazepoint_aoi_sensitivity run_gazepoint_aoi_sensitivity
Example AOI geometry tablegazepoint_example_aoi_geometry
Example AOI-window summary tablegazepoint_example_aoi_windows
Example Gazepoint fixation tablegazepoint_example_fixations
Example Gazepoint master tablegazepoint_example_master
Example pupil-window summary tablegazepoint_example_pupil_windows
Gazepoint adapters for standardized eye-tracking data qualitycreate_gazepoint_quality_report gazepoint_spatial_quality plot_gazepoint_quality_dashboard report_gazepoint_quality summarise_gazepoint_spatial_quality
gp3tools user-facing naming policygp3tools_naming_policy
Default performance limits for gp3tools export workflowsgp3tools_performance_limits
Harmonize Gazepoint screen coordinates across resolutionsharmonize_gazepoint_screen_coordinates
Impute missing pupil samples with a lightweight Gaussian-process smootherimpute_gazepoint_pupil_gp
Inspect Gazepoint columnsinspect_gazepoint_columns
Interpolate pupil values across detected blink intervalsinterpolate_gazepoint_blinks
Interpolate short missing gaps in Gazepoint pupil datainterpolate_gazepoint_pupil
Interpolate Gazepoint pupil data using PCHIPinterpolate_gazepoint_pupil_pchip
Launch or describe a lightweight QC dashboardlaunch_gazepoint_qc_dashboard
Calculate mean binocular pupil sizemean_gazepoint_pupil
Plot AOI time-course GAMM resultsplot_gazepoint_aoi_gamm
Plot an AOI timelineplot_gazepoint_aoi_timeline
Plot Gazepoint AOI transition matrixplot_gazepoint_aoi_transition_matrix
Plot AOI geometry for visual verificationplot_gazepoint_aoi_verification
Plot binocular pupil diagnostics, reconstruction, and sensitivityplot_gazepoint_binocular_diagnostics
Plot the cluster-permutation null distributionplot_gazepoint_cluster_null_distribution
Plot a Gazepoint cluster-permutation resultplot_gazepoint_cluster_permutation
Plot cluster-based permutation resultsplot_gazepoint_cluster_results
Plot event-detector comparison diagnosticsplot_gazepoint_event_detector_agreement
Plot event-detector benchmark diagnosticsplot_gazepoint_event_detector_benchmark
Plot external facial-behaviour data qualityplot_gazepoint_face_quality
Plot observed and fitted Growth Curve Analysis trajectoriesplot_gazepoint_gca
Plot a Gazepoint gaze or fixation heatmapplot_gazepoint_heatmap
Plot a Gazepoint heatmap over a background imageplot_gazepoint_heatmap_overlay
Plot a Gazepoint missingness profileplot_gazepoint_missingness_profile
Plot observed summaries and model-implied predictionsplot_gazepoint_model_predictions
Plot model residual diagnosticsplot_gazepoint_model_residuals
Plot Gazepoint preprocessing multiverse resultsplot_gazepoint_multiverse_results
Plot a Gazepoint task-phase timelineplot_gazepoint_phase_timeline
Plot Gazepoint pupil preprocessing for one trialplot_gazepoint_pupil_preprocessing
Plot Gazepoint pupil preprocessing statusplot_gazepoint_pupil_status
Plot Gazepoint pupil time courseplot_gazepoint_pupil_timecourse
Plot a Gazepoint QC overviewplot_gazepoint_qc_overview
Plot a fixation scanpathplot_gazepoint_scanpath
Plot scanpath-cluster stabilityplot_gazepoint_scanpath_cluster_stability
Plot fitted scanpath clustersplot_gazepoint_scanpath_clusters
Plot multiple Gazepoint scanpathsplot_gazepoint_scanpaths
Plot stimulus-layout quality controlplot_gazepoint_stimulus_layout_qc
Plot a Gazepoint-style time seriesplot_gazepoint_time_series
Plot a time-varying effect curveplot_gazepoint_time_varying_effect
Plot Gazepoint sampling-rate diagnosticsplot_sampling_rate
Plot Gazepoint tracking-quality diagnosticsplot_tracking_quality
Plot an AOI transition heatmapplot_transition_heatmap
Prepare AOI time-course data for GAMM analysisprepare_gazepoint_aoi_gamm_data
Prepare AOI-window data for binomial GLMMsprepare_gazepoint_aoi_glmm_data
Prepare Gazepoint AOI sequencesprepare_gazepoint_aoi_sequences
Prepare time-course data for cluster-based permutation testsprepare_gazepoint_cluster_data
Prepare Gazepoint master data for eyetools-style workflowsprepare_gazepoint_eyetools_data
Prepare Gazepoint master data for eyetrackingR-style workflowsprepare_gazepoint_eyetrackingr_data
Prepare fixation- or saccade-contingent aligned Gazepoint dataprepare_gazepoint_fixation_aligned_data
Prepare Gazepoint master data for gazer-style workflowsprepare_gazepoint_gazer_data
Prepare Gazepoint Growth Curve Analysis dataprepare_gazepoint_gca_data
Prepare gp3tools gaze output for a gpbiometrics workflowprepare_gazepoint_gpbiometrics_bridge
Prepare a trial-level export for Python HDDMprepare_gazepoint_hddm_export
Prepare gaze or fixation coordinates for heatmap plottingprepare_gazepoint_heatmap_data
Prepare Gazepoint AOI/state sequences for HMM-style workflowsprepare_gazepoint_hmm_data
Prepare multimodal Gazepoint and external face-window dataprepare_gazepoint_multimodal_data
Prepare Gazepoint pupil GAMM dataprepare_gazepoint_pupil_gamm_data
Prepare pupil-window data for confirmatory mixed modelsprepare_gazepoint_pupil_window_model_data
Prepare Gazepoint master data for pupillometryR-style workflowsprepare_gazepoint_pupillometryr_data
Prepare Gazepoint AOI sequences for semi-Markov modellingprepare_gazepoint_semimarkov_data
Prepare time-course data for Gazepoint cluster-permutation testingprepare_gazepoint_timecourse_test_data
Prepare AOI sequences for TraMineR-style workflowsprepare_gazepoint_traminer_data
Run an integrated Gazepoint signal-preprocessing workflowpreprocess_gazepoint_signals
Read a Gazepoint all-gaze or fixation CSV exportread_gazepoint
Read external facial-analysis exportsread_gazepoint_face_export
Read multiple Gazepoint CSV exports from a folderread_gazepoint_folder
Read a Gazepoint Analysis Data Summary exportread_gazepoint_summary
Offline gaze recalibration using known target coordinatesrecalibrate_gazepoint_gaze
Recommend trial and participant exclusionsrecommend_gazepoint_exclusions
Recommend model families for Gazepoint-derived metricsrecommend_gazepoint_model_family
Reconstruct temporarily unavailable binocular pupil channelsreconstruct_gazepoint_binocular_pupil
Fuse binocular pupil traces using cross-eye regressionregress_gazepoint_pupils
Report a Gazepoint cluster-permutation resultreport_gazepoint_cluster_permutation
Report external facial-behaviour QC and reporting readinessreport_gazepoint_face_qc
Report Gazepoint missingnessreport_gazepoint_missingness
Report multiverse-analysis resultsreport_gazepoint_multiverse
Report task-phase coveragereport_gazepoint_phase_coverage
Report Gazepoint QC overviewreport_gazepoint_qc_overview
Run a Gazepoint AOI preprocessing multiverserun_gazepoint_aoi_multiverse
Run paired cluster-based permutation testsrun_gazepoint_cluster_permutation
Guardrail for cluster-permutation ANOVArun_gazepoint_cluster_permutation_anova
Guardrail for covariate-adjusted cluster permutationrun_gazepoint_cluster_permutation_covariate_adjusted
Guardrail for mixed-model cluster permutationrun_gazepoint_cluster_permutation_lmer
Guardrail for parallel cluster permutationrun_gazepoint_cluster_permutation_parallel
Run threshold-sensitivity checks for Gazepoint cluster permutationrun_gazepoint_cluster_threshold_sensitivity
Run optional eyetools fixation and saccade detectionrun_gazepoint_eyetools_fixation_detection
Run an optional gazeR pupil-preprocessing cross-checkrun_gazepoint_gazer_crosscheck
Run a tested gp3tools-to-gpbiometrics integration workflowrun_gazepoint_gpbiometrics_workflow
Run leave-one-unit model sensitivity analysisrun_gazepoint_model_leave_one_out
Guardrail for multidimensional cluster permutationrun_gazepoint_multidimensional_cluster_permutation
Run a Gazepoint pupil preprocessing multiverserun_gazepoint_pupil_multiverse
Guardrail for threshold-free cluster enhancementrun_gazepoint_tfce
Run a complete Gazepoint analysis workflowrun_gazepoint_workflow
Save standard Gazepoint diagnostic plotssave_gazepoint_plots
Segment Gazepoint-style data into task phasessegment_gazepoint_task_phases
Select the next adaptive trial from candidate stimuliselect_gazepoint_adaptive_trial
Select the number of scanpath clustersselect_gazepoint_scanpath_clusters
Simulate simple Gazepoint cluster time-course datasimulate_gazepoint_cluster_timecourse_data
Simulate simple Gazepoint-style gaze datasimulate_gazepoint_data
Simulate Gazepoint-like fixation eventssimulate_gazepoint_fixations
Simulate Gazepoint-like pupil datasimulate_gazepoint_pupil_data
Smooth gaze coordinates within independent sequencessmooth_gazepoint_coordinate
Smooth Gazepoint pupil datasmooth_gazepoint_pupil
Standardise Gazepoint column namesstandardise_gazepoint_names
Standardise external facial-analysis columnsstandardize_gazepoint_face_columns
Stress-test binocular reconstruction across missingness levelsstress_test_gazepoint_binocular_reconstruction
Summarise sample-level AOI viewingsummarise_aoi_samples
Summarise fixation-level AOI metricssummarise_fixations
Summarise Gazepoint AOI metrics from gaze and fixation exportssummarise_gazepoint_aoi
Summarise Gazepoint AOI entry episodessummarise_gazepoint_aoi_entries
Summarise Gazepoint AOI transition featuressummarise_gazepoint_aoi_transitions
Summarise Gazepoint AOI trial featuressummarise_gazepoint_aoi_trial_features
Summarise Gazepoint AOI samples within predefined time windowssummarise_gazepoint_aoi_windows
Create manuscript-ready binocular reconstruction reportingsummarise_gazepoint_binocular_reporting
Summarise cluster-based permutation resultssummarise_gazepoint_clusters
British-spelling alias for 'summarize_gazepoint_coordinate_coverage()'summarise_gazepoint_coordinate_coverage
Summarise estimated marginal means and contrastssummarise_gazepoint_emmeans
Summarise agreement between event detectorssummarise_gazepoint_event_detector_agreement
Summarise an event-detector benchmarksummarise_gazepoint_event_detector_benchmark
British-spelling alias for 'summarize_gazepoint_face_reactivity()'summarise_gazepoint_face_reactivity
British-spelling alias for 'summarize_gazepoint_face_windows()'summarise_gazepoint_face_windows
Summarise Gazepoint fixation trial featuressummarise_gazepoint_fixation_trials
Summarise fixed effects from fitted modelssummarise_gazepoint_fixed_effects
Summarise a Gazepoint Markov-chain objectsummarise_gazepoint_markovchain
Summarise Gazepoint preprocessing multiverse resultssummarise_gazepoint_multiverse_results
Summarise Gazepoint pupil datasummarise_gazepoint_pupil
British-spelling alias for 'summarize_gazepoint_pupil_response_features()'summarise_gazepoint_pupil_response_features
Summarise Gazepoint pupil trial-level featuressummarise_gazepoint_pupil_trial_features
Summarise Gazepoint pupil responses within time windowssummarise_gazepoint_pupil_windows
Summarise scanpath-cluster stabilitysummarise_gazepoint_scanpath_cluster_stability
Summarise Gazepoint semi-Markov datasummarise_gazepoint_semimarkov
British-spelling alias for 'summarize_gazepoint_time_clusters()'summarise_gazepoint_time_clusters
Summarise a Gazepoint workflow resultsummarise_gazepoint_workflow
Summarise Gazepoint tracking qualitysummarise_tracking_quality
Summarize gaze-coordinate coverage over a screen gridsummarize_gazepoint_coordinate_coverage
Summarise external facial-behaviour data qualitysummarise_gazepoint_face_quality summarize_gazepoint_face_quality
Summarise facial-behaviour reactivity between two windowssummarize_gazepoint_face_reactivity
Summarise external facial-behaviour data within analysis windowssummarize_gazepoint_face_windows
Summarize missingness in Gazepoint-style datasummarise_gazepoint_missingness summarize_gazepoint_missingness
Summarize task-phase coveragesummarise_gazepoint_phase_coverage summarize_gazepoint_phase_coverage
Summarize pupil response features by subject and trialsummarize_gazepoint_pupil_response_features
Summarize Gazepoint QC statussummarise_gazepoint_qc_status summarize_gazepoint_qc_status
Summarize Gazepoint time clusterssummarize_gazepoint_time_clusters
Synchronise external facial-behaviour data with Gazepoint datasync_gazepoint_face_data
Create a tidy model summary for manuscript tablestidy_gazepoint_model_summary
Transform AOI proportions to empirical logitstransform_gazepoint_aoi_empirical_logit
Validate binocular reconstruction using artificial monocular lossvalidate_gazepoint_binocular_reconstruction
Validate a Gazepoint master sample tablevalidate_gazepoint_master
Write a gp3tools naming-consistency auditwrite_gazepoint_naming_audit
Write standard Gazepoint analysis outputswrite_gazepoint_outputs
Write gp3tools performance benchmark tableswrite_gazepoint_performance_benchmark