Complete Public API Map

This article is a discoverability index for the frozen development API. It groups every exported function by its primary interface role. Function names are linked by pkgdown to their full reference documentation. The map is not a recommendation to call every low-level adapter directly.

Frozen development API size: 324 exported functions.

Audits

  • audit_backend_parity()
  • audit_design_support()
  • audit_duration_boundaries()
  • audit_duration_unit_invariance()
  • audit_estimand_invariance()
  • audit_fixed_effect_design()
  • audit_missingness_structure()
  • audit_model_readiness()
  • audit_model_readiness_strict()
  • audit_prediction_support()
  • audit_random_effects_support()

Checks

  • check_binary_posterior_predictive()
  • check_binary_ppc_details()
  • check_binary_prior_predictive()
  • check_cmdstan_backend()
  • check_duration_posterior_predictive()
  • check_duration_ppc_details()
  • check_duration_prior_predictive()
  • check_model_ppc()

Constructors and bundles

  • create_analysis_bundle()
  • create_analysis_figure_set()
  • create_analysis_manifest()
  • create_binary_model_report()
  • create_brms_sbc_plan()
  • create_complete_evidence_inventory()
  • create_contrast_coding_sensitivity_specification()
  • create_custom_sbc_plan()
  • create_diagnostic_dashboard()
  • create_diagnostic_dashboard_figures()
  • create_duration_model_report()
  • create_duration_unit_sensitivity_specification()
  • create_figure_set()
  • create_group_deletion_sensitivity_plan()
  • create_loo_influence_atlas()
  • create_model_card()
  • create_model_contract()
  • create_model_evidence_report()
  • create_model_specification()
  • create_prediction_contrast_profile()
  • create_prediction_grid()
  • create_prediction_profile()
  • create_prediction_surface()
  • create_predictive_distribution_atlas()
  • create_predictor_scaling_sensitivity_specification()
  • create_prior_specification()
  • create_publication_registry()
  • create_publication_table_set()
  • create_random_slope_sensitivity_plan()
  • create_reporting_checklist()
  • create_sensitivity_suite_plan()
  • create_transformation_recipe()

Execution workflows

  • run_binary_recovery()
  • run_duration_recovery()
  • run_group_deletion_sensitivity()
  • run_random_slope_sensitivity()
  • run_sbc_plan()
  • run_sensitivity_suite()

Explicit writers

  • write_analysis_bundle_report()
  • write_diagnostic_dashboard_report()
  • write_model_card()
  • write_publication_registry()
  • write_reproducibility_report()

Extraction

  • extract_expected_predictions()
  • extract_linear_predictions()
  • extract_log_likelihood()
  • extract_posterior_draws()
  • extract_posterior_predictions()
  • extract_sampler_diagnostics()

Freezing and reproducibility

  • freeze_analysis_manifest()
  • freeze_gp3bayes_schema()

Model fitting

  • fit_binary_model()
  • fit_binary_model_backend()
  • fit_binary_model_cmdstanr()
  • fit_duration_model()
  • fit_duration_model_backend()
  • fit_duration_model_cmdstanr()

Other public workflows

  • apply_transformation_recipe()
  • assess_binary_prior_sensitivity()
  • assess_duration_prior_sensitivity()
  • assess_powerscaled_sensitivity()
  • backend_capabilities()
  • bayesian_backend_capabilities()
  • binary_calibration_error()
  • binary_calibration_uncertainty()
  • binary_group_calibration()
  • binary_precision_recall_curve()
  • binary_prediction_scores()
  • binary_roc_curve()
  • binary_threshold_metrics()
  • build_model_formula()
  • capture_gp3bayes_schema()
  • collect_model_evidence()
  • compare_analysis_manifests()
  • compare_estimand_sensitivity()
  • compare_gp3bayes_schemas()
  • compare_psis_loo()
  • compute_kfold_cv()
  • compute_loo_model_weights()
  • compute_psis_loo()
  • compute_psis_loo_from_log_lik()
  • detect_binary_separation()
  • diagnose_binary_fit()
  • diagnose_duration_fit()
  • diagnose_model_fit()
  • duration_prediction_scores()
  • duration_quantile_calibration()
  • duration_tail_check()
  • estimate_model_estimands()
  • estimate_standardized_duration_estimands()
  • estimate_standardized_probability_contrast()
  • evaluate_pathological_simulation()
  • gp3bayes_specification_traceability()
  • group_prediction_summary()
  • grouped_prediction_check()
  • identify_identifier_like_predictors()
  • identify_loo_influential_observations()
  • identify_mcmc_issues()
  • interaction_prior_summary()
  • invert_transformation_recipe()
  • loo_flagged_data()
  • loo_influence_summary()
  • model_workflow_status()
  • posterior_predictive_statistic()
  • powerscale_sequence_for_fit()
  • preflight_model_specification()
  • prepare_hierarchical_binary_data()
  • prepare_hierarchical_duration_data()
  • prior_posterior_bridge()
  • prior_posterior_draws_long()
  • random_intercept_variance_partition()
  • register_publication_figure()
  • review_duration_extremes()
  • save_figure_set()
  • save_publication_registry_figures()
  • specify_binary_model()
  • specify_binary_model_with_interaction_prior()
  • specify_duration_model()
  • specify_duration_model_with_interaction_prior()
  • theme_gp3bayes()
  • translate_binary_model_to_brms()
  • translate_binary_model_with_interaction_prior()
  • translate_duration_model_to_brms()
  • translate_duration_model_with_interaction_prior()

Plots and graphics

  • plot_autocorrelation()
  • plot_backend_environment_gg()
  • plot_backend_parity_gg()
  • plot_binary_calibration()
  • plot_binary_calibration_uncertainty()
  • plot_binary_group_calibration()
  • plot_binary_precision_recall()
  • plot_binary_roc()
  • plot_binary_threshold_metrics()
  • plot_design_support_gg()
  • plot_diagnostic_dashboard()
  • plot_duration_pit()
  • plot_duration_qq()
  • plot_duration_quantile_calibration()
  • plot_duration_tail()
  • plot_estimand_intervals()
  • plot_estimand_sensitivity_gg()
  • plot_exceedance_probability()
  • plot_group_deletion_sensitivity()
  • plot_group_effect_distribution()
  • plot_group_effect_rank_probability()
  • plot_group_effects()
  • plot_group_predictions()
  • plot_grouped_prediction_check()
  • plot_loo_group_elpd()
  • plot_loo_group_influence()
  • plot_loo_influence()
  • plot_loo_influence_rank()
  • plot_loo_pareto_vs_elpd()
  • plot_loo_pointwise_elpd()
  • plot_manifest_comparison_gg()
  • plot_mcmc_quality()
  • plot_missingness_gg()
  • plot_model_comparison()
  • plot_model_evidence_gg()
  • plot_model_weights()
  • plot_posterior_areas()
  • plot_posterior_correlations()
  • plot_posterior_density()
  • plot_posterior_intervals()
  • plot_posterior_pairs()
  • plot_powerscale_sensitivity_gg()
  • plot_ppc_statistic()
  • plot_prediction_contrast_profile()
  • plot_prediction_draws()
  • plot_prediction_gradient()
  • plot_prediction_interval_width()
  • plot_prediction_intervals()
  • plot_prediction_profile()
  • plot_prediction_rank_probabilities()
  • plot_prediction_score_uncertainty()
  • plot_prediction_support()
  • plot_prediction_surface()
  • plot_prediction_surface_uncertainty()
  • plot_predictive_atlas_statistics()
  • plot_predictive_coverage()
  • plot_predictive_quantile_envelope()
  • plot_predictive_residuals()
  • plot_prior_posterior_contraction()
  • plot_prior_posterior_density()
  • plot_prior_posterior_intervals()
  • plot_prior_posterior_shift()
  • plot_prior_sensitivity()
  • plot_prior_sensitivity_scenarios()
  • plot_random_intercept_variance_partition()
  • plot_random_slope_sensitivity()
  • plot_rank_diagnostics()
  • plot_recovery_bias()
  • plot_recovery_coverage()
  • plot_recovery_estimates()
  • plot_recovery_fit_status()
  • plot_recovery_rmse()
  • plot_reporting_checklist()
  • plot_sampler_diagnostics()
  • plot_sampling_diagnostics()
  • plot_sbc_coverage_gg()
  • plot_sbc_ecdf_gg()
  • plot_sbc_rank_gg()
  • plot_sbc_simulated_vs_estimated_gg()
  • plot_schema_comparison_gg()
  • plot_sensitivity_suite_gg()
  • plot_uncertainty_decomposition()
  • plot_variance_components()

Prediction

  • predict_binary_probability()
  • predict_duration()
  • predict_model()
  • prediction_contrast()
  • prediction_draws_long()
  • prediction_exceedance_probability()
  • prediction_interval_width()
  • prediction_pairwise_contrasts()
  • prediction_rank_probabilities()
  • prediction_score_uncertainty()
  • prediction_uncertainty_decomposition()
  • predictive_quantile_envelope()
  • predictive_residuals()

Readers

  • read_analysis_manifest()
  • read_gp3bayes_schema()

Simulation

  • simulate_binary_pathology()
  • simulate_declared_prior_draws()
  • simulate_duration_pathology()
  • simulate_hierarchical_binary_data()
  • simulate_hierarchical_duration_data()

Summaries

  • summarise_binary_group_variation()
  • summarise_binary_posterior()
  • summarise_condition_balance()
  • summarise_duration_posterior()
  • summarise_estimand_draws()
  • summarise_mcmc_quality()
  • summarise_model_posterior()
  • summarise_sbc_result()
  • summarise_sensitivity_suite()

Tables and adapters

  • analysis_bundle_table()
  • analysis_manifest_table()
  • backend_environment_table()
  • backend_parity_table()
  • binary_calibration_table()
  • binary_calibration_uncertainty_table()
  • binary_confusion_table()
  • design_support_table()
  • diagnostic_dashboard_table()
  • duration_pit_table()
  • duration_qq_table()
  • estimand_sensitivity_table()
  • evidence_inventory_table()
  • group_deletion_sensitivity_table()
  • group_effect_draws_table()
  • group_effect_rank_probability_table()
  • group_effect_table()
  • loo_diagnostic_table()
  • loo_group_influence_table()
  • loo_influence_atlas_table()
  • loo_pointwise_table()
  • loo_summary_table()
  • manifest_comparison_table()
  • mcmc_diagnostic_table()
  • missingness_audit_table()
  • model_card_table()
  • model_comparison_table()
  • model_evidence_table()
  • model_weights_table()
  • posterior_correlation_table()
  • posterior_interval_table()
  • posterior_predictive_summary_table()
  • posterior_probability_table()
  • powerscale_sensitivity_table()
  • ppc_statistic_table()
  • prediction_contrast_profile_table()
  • prediction_gradient_table()
  • prediction_profile_table()
  • prediction_score_uncertainty_table()
  • prediction_support_table()
  • prediction_surface_table()
  • prediction_table()
  • predictive_coverage_table()
  • predictive_distribution_atlas_table()
  • prior_posterior_distance_table()
  • prior_posterior_summary_table()
  • prior_sensitivity_scenario_table()
  • prior_sensitivity_table()
  • prior_specification_table()
  • publication_registry_table()
  • random_intercept_variance_partition_table()
  • random_slope_sensitivity_table()
  • recovery_estimate_table()
  • recovery_fit_status_table()
  • recovery_parameter_table()
  • register_publication_table()
  • sampler_diagnostic_table()
  • sbc_overview_table()
  • sbc_stats_table()
  • schema_comparison_table()
  • sensitivity_suite_table()
  • variance_component_table()

Validation

  • validate_analysis_manifest()
  • validate_backend_environment()
  • validate_gp3bayes_object()
  • validate_gp3bayes_schema()
  • validate_prior_specification()
  • validate_publication_registry()
  • validate_transformation_replay()